Here is John Lindh's agreement in part:
12. This plea agreement is not conditioned upon charges being brought against any other individual. This plea agreement is not conditioned upon any outcome in any pending investigation. This plea agreement is not conditioned upon any result in any future prosecution which may occur because of the defendants cooperation. This plea agreement is not conditioned upon any result in any future grand jury presentation or trial involving charges resulting from this investigation. This plea agreement is conditioned upon the defendants providing full, complete and truthful cooperation.
Here's another part of this plea:
9. The defendant agrees to cooperate fully, truthfully and completely with the United States, and provide all information known to the defendant. A failure to cooperate fully, truthfully and completely is a breach of this plea agreement, as determined by the Court
https://www.justice.gov/ag/plea-agreement
So it's possible things just got much worse for Our Lady of the Poor (Judgement)